Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs927340 | chr6:3023718 | C/T | 1.12E-5 | 407 | 16.33 | 13.57 | 8.68 | KM Plot |
| LGG | rs9296516 | chr6:46911935 | C/T | 1.62E-5 | 407 | 14.92 | 16.77 | 12.5 | KM Plot |
| LGG | rs9296861 | chr6:57000936 | A/G | 3.29E-6 | 406 | 15.33 | 15.25 | 7.8 | KM Plot |
| LGG | rs9322227 | chr6:150198491 | C/T | 8.51E-5 | 407 | 14.77 | 17.75 | 15.92 | KM Plot |
| LGG | rs932969 | chr9:34001455 | T/C | 6.44E-6 | 404 | 15.37 | 16.38 | 6.13 | KM Plot |
| LGG | rs9348926 | chr6:33807995 | C/T | 6.5E-5 | 406 | 15.3 | 12.62 | 19.2 | KM Plot |
| LGG | rs9349845 | chr6:57041124 | T/C | 3.29E-6 | 404 | 15.33 | 15.43 | 7.8 | KM Plot |
| LGG | rs9357939 | chr6:57047533 | C/T | 3.29E-6 | 404 | 15.33 | 15.43 | 7.8 | KM Plot |
| LGG | rs9357940 | chr6:57059820 | T/G | 3.47E-6 | 403 | 15.33 | 15.3 | 7.8 | KM Plot |
| LGG | rs9367711 | chr6:56963708 | T/G | 3.88E-6 | 401 | 15.25 | 15.43 | 7.8 | KM Plot |
| LGG | rs9367713 | chr6:57001575 | T/A | 3.29E-6 | 406 | 15.33 | 15.25 | 7.8 | KM Plot |
| LGG | rs9367714 | chr6:57030848 | C/T | 3.26E-6 | 405 | 15.25 | 15.43 | 7.8 | KM Plot |
| LGG | rs9368778 | chr6:33808094 | A/T | 2.84E-5 | 407 | 19.2 | 12.62 | 15.32 | KM Plot |
| LGG | rs9370559 | chr6:56929809 | G/C | 3.41E-6 | 405 | 15.25 | 15.43 | 7.8 | KM Plot |
| LGG | rs9370563 | chr6:56969223 | C/T | 3.72E-6 | 402 | 15.33 | 15.43 | 7.8 | KM Plot |